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YINGYING ZHU Assistant Professor Computer Science, University of Texas at Arlington Arlington TX Email: yingying dot zhu at uta dot edu / yingying dot zhu at nih dot gov |
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| I am working in the Computer Science and Engineering Department, University of Texas at Arlington as an assistant professor and also a guest researcher working in clinical center, NIH. I was a Staff Scientist working with Ronald M. Summers at Clinical Center, National Institutes of Health. I work on the intersection of computer vision, medical image analysis, bioinformatics and machine learning with the goal of developing machine learning tools for solving real-world problems. I am currently looking for PhD student to working on machine learning, computer vision and medical data analysis. Details can be found here. https://docs.google.com/document/d/1PI9gy61GigA6HzUChSxeAVKWsQzCkfSXSJM68dUJFZY/edit?usp=sharing I did a postdoc at Cornell University working with Mert Sabuncu and postdoc in UNC Chapel Hill working with Guorong Wu. I obtained my Ph.D. from University of Queensland, Australia under the supervision of Simon Lucey (currently research associate professor in CMU, Pittsburgh, USA). I received my B.S. from Sichuan University and M. S. from University of Electronic Science and Technology of China. |
Selected Publications
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COVID-19-CT-CXR: a freely accessible and weakly labeled chest X-ray and CT image collection on COVID-19 from biomedical literature Yifan Peng, Yuxing Tang, Sungwon Lee, Yingying Zhu, Ronald M. Summers, Zhiyong Lu to appear in IEEE Transaction on Big Data 2020
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Automatic recognition of abdominal lymph nodes from clinical text Yifan Peng, Sungwon Lee, Shuai Wang, Qingyu Chen, Yingying Zhu, Ronald M. Summers, Zhiyong Lu to appear in clinical NLP 2020
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Atherosclerotic Plaque Burden on Abdominal CT: Automated Assessment with Deep Learning on Noncontrast and Contrast-enhanced Scans Ronald M. Summers, Daniel C. Elton, Sungwon Lee, Yingying Zhu, Jiamin Liu , Mohammedhadi Bagheri, Veit Sandfort, Peter C. Grayson , Nehal N. Mehta, Peter A. Pinto, W. Marston Linehan, Alberto A. Perez , Peter M. Graffy , Stacy D. O’Connor, Perry J. Pickhardt to appear in Academic Radiology 2020
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An Interpretable Generative Model for Abnormal Disease Separation and Radiorealistic Normal ChestX-ray Synthesis Youbao Tang, Yuxing Tang, Yingying Zhu, Jing Xiao, Ronald M. Summers to appear in Medical Image Analysis 2020
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Long Range Early Diagnosis of Alzheimer's Disease Using Longitudinal MR Imaging Data Yingying Zhu, Minjeong Kim, Xiaofeng Zhu, Guorong Wu to appear in Medical Image Analysis 2020
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Cross-Domain Medical Imaging Translation using Shared Gaussian Mixture Model Yingying Zhu, Youbao Tang, Yuxing Tang, Daniel C. Elton, Sungwon Lee, Perry J. Pickhardt, Ronald M. Summers Accepted by MICCAI 2020
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E2Net: An Edge Enhanced Network for Accurate Liver and Tumor Segmentation on CT Scans Youbao Tang, Yuxing Tang, Yingying Zhu, Ronald M. Summers Early Accepted by MICCAI 2020
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Image Translation by Latent Union of Subspaces for Cross-Domain Plaque Segmentations Yingying Zhu, Daniel C. Elton, Sungwon Lee, Perry J. Pickhardt, Ronald M. Summers Medical Imaging with Deep Learning (MIDL) 2020
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Multi-level U-Net for Pancreas Segmentation from Non-Contrast CT Scans through Domain Adaptation Sai Aditya Sriram, Angshuman Paul, Yingying Zhu, Veit Sandfort, Perry J. Pickhardt, Ronald M. Summers SPIE Medical Imaging 2020
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Detecting Cannabis-Associated Cognitive Impairment Using Resting-State fNIRS Yingying Zhu, Jodi Gilman, Anne Eden Evins, Mert Sabuncu MICCAI 2019, oral presentation, accept rate<5%
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A Bayesian Disease Progression Model for Clinical Trajectories Yingying Zhu, Mert Sabuncu GRAIL 2018, Beyond MIC 2018, oral presentation
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Dynamic fMRI networks predict success in a behavioral weight loss program among older adults Fatemeh Mokhtari, W Jack Rejeski, Yingying Zhu, Guorong Wu, Sean L Simpson, Jonathan H Burdette, Paul J Laurienti Neuroimage 2018
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Dynamic Hyper-Graph Inference Framework for Computer-Assisted Diagnosis of Neurodegenerative Diseases Yingying Zhu, Xiaofeng Zhu, Minjeong Kim, Jin Yan, Daniel Kaufer, Guorong Wu IEEE transactions on medical imaging 38 (2), 608-616, 2018
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A Probabilistic Disease Progression Model for Predicting Future Clinical Outcome Yingying Zhu, Mert R Sabuncu arXiv preprint arXiv:1803.05011 2018
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Personalized diagnosis for Alzheimer's disease Yingying Zhu, Minjeong Kim, Xiaofeng Zhu, Jin Yan, Daniel Kaufer and Guorong Wu MICCAI 2017
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Multi-modal classification of neurodegenerative disease by progressive graph-based transductive learning Zhengxia Wang, Xiaofeng Zhu, Ehsan Adeli, Yingying Zhu, Feiping Nie, Brent Munsell, Guorong Wu Medical Image Analysis 2017
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A tensor statistical model for quantifying dynamic functional connectivity Yingying Zhu, Xiaofeng Zhu, Minjeong Kim, Jin Yan, Guorong Wu IPMI 2017
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A novel dynamic hyper-graph inference framework for computer assisted diagnosis of neuro-diseases Yingying Zhu, Xiaofeng Zhu, Minjeong Kim, Jin Yan, Guorong Wu IPMI 2017
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Progressive graph-based transductive learning for multi-modal classification of brain disorder disease Zhengxia Wang, Xiaofeng Zhu, Ehsan Adeli, Yingying Zhu, Chen Zu, Feiping Nie, Dinggang Shen, Guorong Wu MICCAI 2016
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Reveal consistent spatial-temporal patterns from dynamic functional connectivity for autism spectrum disorder identification Yingying Zhu, Xiaofeng Zhu, Han Zhang, Wei Gao, Dinggang Shen, Guorong Wu MICCAI 2016
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Early diagnosis of Alzheimer's disease by joint feature selection and classification on temporally structured support vector machine Yingying Zhu, Xiaofeng Zhu, Minjeong Kim, Dinggang Shen, Guorong Wu MICCAI 2016, oral presentation, accept rate < 5%
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Complex non-rigid motion 3d reconstruction by union of subspaces Yingying Zhu, Dong Huang, Fernando De La Torre, Simon Lucey CVPR 2014
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Convolutional sparse coding for trajectory reconstruction Yingying Zhu, Simon Lucey IEEE transactions on pattern analysis and machine intelligence 2014
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Efficient Articulated Trajectory Reconstruction Using Dynamic Programming and Filters Jack Valmadre, Yingying Zhu, Sridha Sridharan, Simon Lucey ECCV 2012
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3D motion reconstruction for real-world camera motion Yingying Zhu, Mark Cox, Simon Lucey CVPR 2011
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Teaching
CSE 5368 Neural Networks Fall 2020 Syllabus CSE-5368-002 |